1. Center for Computationally Assisted Science and Technology
  2. CCAST User Guide
  3. Advanced Research Computing Training Program
  4. CCAST Usage Policies
  5. Internship Program in Advanced Research Computing
  6. Bioinformatics - ABySS
  7. Creating Python Virtual Environments
  8. Using Singularity on HPC Clusters
  9. Installing R Packages in your Home Directory
  10. Using Intel Compilers on HPC Clusters
  11. Logging into CCAST's HPC clusters using SSH
  12. Running MATLAB on HPC Clusters
  13. Running Machine Learning on HPC Clusters
  14. Running Big Data on HPC Clusters
  15. Highlights - A Novel Modeling Framework for Predicting the Glass Transition Temperature Behavior of Polymers
  16. Highlights - Modeling Light-Driven Processes at the Surfaces and Interfaces of Nanomaterials
  17. Highlights - Genomic Basis of Fetal Programming in Beef Cattle
  18. Highlights - Dynamics of Photoexcited Nanomaterials
  19. Highlights - Identification of Multi-Omic Marker Associations in Pancreatic Cancer
  20. Highlights - Predictive Modeling and Analytics for Preventive Health Application
  21. Highlights - Computational Intelligence
  22. Highlights - Mapping and Cloning Disease Resistance Genes in Barley and Wheat
  23. Highlights - Computational Methods for Motif Discovery in Biological Units
  24. Highlights - Multiscale Modeling of Complex Nanosheet Materials
  25. Highlights - Increasing Pulse Crop Productivity Using Genomics, High-Throughput Phenotyping, and Modeling
  26. Highlights - Future Farming by Artificial Intelligence, Robotic, and Cloud Computing
  27. Highlights - Financial, Economics, and Business Analytics
  28. Highlights - Predicting OLED Properties Using Advanced First-Principles Relativistic DFT Calculations
  29. Highlights - Computational Fluid Modeling of Floods
  30. Using Intel Math Kernel Library (MKL) on HPC Clusters
  31. Running Gaussian16 on HPC Clusters (Advanced)
  32. Running Gaussian16 on HPC Clusters (Beginner)
  33. Open OnDemand - How to Access
  34. Open OnDemand - A Graphical Application (RELION)
  35. Running Bioinformatics Software on HPC Clusters
  36. Bioinformatics - MEGAHIT
  37. Bioinformatics - BCFtools
  38. Bioinformatics - BLAST+
  39. Bioinformatics - Canu
  40. Bioinformatics - ClustalW-MPI
  41. Bioinformatics - FastQC
  42. Bioinformatics - FSA
  43. Bioinformatics - Maq
  44. Bioinformatics - MaSuRCA
  45. Bioinformatics - Meraculous-2D
  46. Bioinformatics - Ragout
  47. Bioinformatics - RepeatMasker
  48. Bioinformatics - RMAP
  49. Bioinformatics - SOAPdenovo-Trans
  50. Bioinformatics - SOAPdenovo2
  51. Bioinformatics - SortMeRNA
  52. Bioinformatics - StringTie
  53. Bioinformatics - Transrate
  54. Bioinformatics - Trimmomatic
  55. Bioinformatics - Trinity
  56. Bioinformatics - Trinotate
  57. Bioinformatics - Velvet