1. CCAST User Guide
  2. Statistical Consulting
  3. Logging into CCAST using SSH
  4. Center for Computationally Assisted Science and Technology (CCAST)
  5. Installing R Packages in your Home Directory
  6. Creating Python Virtual Environments
  7. Using Intel Compilers on HPC Clusters
  8. Advanced Networks
  9. Statistical Consulting - Services and Support
  10. CCAST Advanced Research Computing Training
  11. CCAST Usage Policies
  12. Bioinformatics - BCFtools
  13. Running Bioinformatics Software on HPC Clusters
  14. Bioinformatics - BLAST+
  15. Bioinformatics - ABySS
  16. Bioinformatics - ClustalW-MPI
  17. Bioinformatics - Canu
  18. Bioinformatics - SortMeRNA
  19. Bioinformatics - MaSuRCA
  20. Bioinformatics - MEGAHIT
  21. Bioinformatics - Trinotate
  22. Bioinformatics - FastQC
  23. Bioinformatics - Trinity
  24. Bioinformatics - StringTie
  25. Bioinformatics - FSA
  26. Bioinformatics - Maq
  27. Bioinformatics - RepeatMasker
  28. Bioinformatics - Velvet
  29. Bioinformatics - Transrate
  30. Bioinformatics - Ragout
  31. Open OnDemand - How to Access
  32. Bioinformatics - SOAPdenovo-Trans
  33. Bioinformatics - SOAPdenovo2
  34. Bioinformatics - Trimmomatic
  35. Bioinformatics - Meraculous-2D
  36. Bioinformatics - RMAP
  37. Using Intel Math Kernel Library (MKL) on HPC Clusters