1. CCAST User Guide
2. Statistical Consulting
3. Logging into CCAST using SSH
4. Center for Computationally Assisted Science and Technology (CCAST)
5. Installing R Packages in your Home Directory
6. Creating Python Virtual Environments
7. Using Intel Compilers on HPC Clusters
8. Advanced Networks
9. Statistical Consulting - Services and Support
10. CCAST Advanced Research Computing Training
11. CCAST Usage Policies
12. Bioinformatics - BCFtools
13. Running Bioinformatics Software on HPC Clusters
14. Bioinformatics - BLAST+
15. Bioinformatics - ABySS
16. Bioinformatics - ClustalW-MPI
17. Bioinformatics - Canu
18. Bioinformatics - SortMeRNA
19. Bioinformatics - MaSuRCA
20. Bioinformatics - MEGAHIT
21. Bioinformatics - Trinotate
22. Bioinformatics - FastQC
23. Bioinformatics - Trinity
24. Bioinformatics - StringTie
25. Bioinformatics - FSA
26. Bioinformatics - Maq
27. Bioinformatics - RepeatMasker
28. Bioinformatics - Velvet
29. Bioinformatics - Transrate
30. Bioinformatics - Ragout
31. Open OnDemand - How to Access
32. Bioinformatics - SOAPdenovo-Trans
33. Bioinformatics - SOAPdenovo2
34. Bioinformatics - Trimmomatic
35. Bioinformatics - Meraculous-2D
36. Bioinformatics - RMAP
37. Using Intel Math Kernel Library (MKL) on HPC Clusters